OncoKB System

This is the documentation describing the current running apps in varies production environments.

Environments

oncokb.org

• All apps under oncokb.org is managed by ArgoCD.
• Cluster is in us-east-1
• Access cluster
  • We shared the AWS account with cBioPortal. Please reach out to Ino de Bruijn(debruiji@mskcc.org) for access
  • See HERE for details on how to log in to the cluster
  • Once logged in, you need to switch to k8s context to see the cluster.
    • Use aws eks --region us-east-1 update-kubeconfig --name <cluster name> if it's first time accessing the cluster
    • Use kubectl config use-context <cluster name>to switch to cluster
• Update infrastructure
  • We use Terraform to manage infrastructure. Reach out to Zain Nasir (nasirz1@mskcc.org) for more info.

eucentral.oncokb.org

• All apps under eucentral.oncokb.org is managed by k8s.
• Cluster is in eu-central-1
• This is under the legacy AWS account. Please reach out to Ino de Bruijn(debruiji@mskcc.org) for access
• Update infrastructure
  • We use aws eks created/updated ec2 resource. Other resource through website or aws cli.

oncokb.aws.mskcc.org

• All apps under oncokb.dev.aws.mskcc.org is managed by ArgoCD.
• Cluster is in us-east-1
• We use standard private VPC account from MSK. Please reach out to MSK security for access.
• Access cluster
  • We use standard private VPC account from MSK. Please reach out to MSK security for access.
  • See HERE for details on how to log in to the cluster
  • Once logged in, you need to switch to k8s context to see the cluster.
    • Use aws eks --region us-east-1 update-kubeconfig --name <cluster name> if it's first time accessing the cluster
    • Use kubectl config use-context <cluster name>to switch to cluster
• Update infrastructure
  • We use Terraform to manage infrastructure. Reach out to Zain Nasir (nasirz1@mskcc.org) for more info.

oncokb.dev.aws.mskcc.org

• All apps under oncokb.dev.aws.mskcc.org is managed by ArgoCD.
• Cluster is in us-east-1
• Access cluster
  • See the same section of oncokb.aws.mskcc.org environment for details
• Update infrastructure
  • See the same section of oncokb.aws.mskcc.org environment for details